Fitness data for PS417_27930 in Pseudomonas simiae WCS417

type VI secretion protein
SEED: Uncharacterized protein ImpJ/VasE
KEGG: type VI secretion system protein ImpJ

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source NAG (C) -1.1 -1.5 compare
carbon source NAG (C) -0.9 -1.2 compare
carbon source L-Citrulline (C) -0.7 -2.3 compare
root root sample 6; outgrowth in LB -0.7 -2.2 compare
carbon source Carbon source L-Ornithine 10 mM -0.7 -2.3 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.6 -2.7 compare
carbon source L-Alanine (C) -0.6 -2.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.7 compare
phage P. simiae OR Antrim MOI 0.1 -0.5 -2.0 compare
phage P. simiae ORA MOI 0.1 +0.5 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +2.0 compare
phage JP1 MOI 10 +0.6 +1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +1.3 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +2.2 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 +1.6 compare
phage P. simiae Grant Run MOI 10 +0.6 +1.7 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.8 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.8 +1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 +3.2 compare