Fitness data for PS417_27095 in Pseudomonas simiae WCS417

AraC family transcriptional regulator
SEED: Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. simiae ORA MOI 0.1 -0.9 -3.5 compare
phage P. simiae OR Antrim MOI 1 -0.6 -2.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -2.3 compare
seeds Growth on radish seeds for 72 hours -0.5 -1.8 compare
phage P. simiae OR Antrim MOI 0.1 -0.5 -2.7 compare
phage P. simiae OR1 MOI 0.1 -0.5 -1.8 compare
carbon source NAG (C) -0.4 -2.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.3 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.4 -1.6 compare
ecofab LB in EcoFAB_3.5mL -0.4 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.4 compare
stress Gentamicin 0.008 mg/ml +0.4 +1.3 compare
stress Phosphomycin 0.002 mg/ml +0.4 +2.0 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +2.0 compare
solid stress Fraxetin 2 mM; solid stress +0.5 +2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.4 compare
motility inner cut, LB soft agar motility assay +0.6 +2.8 compare