Fitness data for PS417_26950 in Pseudomonas simiae WCS417

LysR family transcriptional regulator
SEED: Transcriptional regulators, LysR family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
stress Doxycycline hyclate 0.001 mg/ml -0.5 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -1.5 compare
liquid stress 80% Methanol 2 mM; liquid stress +0.5 +2.9 compare
carbon source Putrescine (C) +0.5 +3.0 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.1 compare
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.5 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5 +1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.2 compare
carbon source 2'-Deoxyinosine 5 mM (C) +0.6 +2.2 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +2.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +2.6 compare
seeds Growth on radish seeds for 72 hours +0.6 +1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +2.4 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.7 +2.9 compare
phage Wcs_0.1 +0.7 +2.2 compare
carbon source L-Valine (C) +0.7 +2.0 compare
root root sample 6; outgrowth in LB +0.8 +1.9 compare
seeds Growth on radish seeds for 72 hours +0.8 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +2.4 compare