Fitness data for PS417_26095 in Pseudomonas simiae WCS417

ornithine cyclodeaminase
SEED: Ornithine cyclodeaminase (EC 4.3.1.12)
KEGG: ornithine cyclodeaminase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
stress methylglyoxal 0.032 vol% -1.3 -1.7 compare
stress Gentamicin 0.008 mg/ml -0.8 -2.2 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -0.8 -1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.6 -2.7 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.6 -2.1 compare
phage P. simiae Grant Run MOI 0.1 -0.6 -1.1 compare
phage Wcs_1 -0.6 -1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.5 compare
stress Phosphomycin 0.001 mg/ml -0.5 -2.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -1.8 compare
motility outer cut, LB soft agar motility assay -0.5 -2.2 compare
phage P. simiae OR Antrim MOI 0.1 +0.5 +1.7 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +0.8 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.6 +1.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.1 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.7 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 +2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 +2.7 compare
phage P. simiae OR1 MOI 0.1 +0.8 +2.0 compare