Fitness data for PS417_25355 in Pseudomonas simiae WCS417

AraC family transcriptional regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
stress methylglyoxal 0.032 vol% -0.8 -1.2 compare
phage P. simiae OR1 MOI 0.1 -0.6 -1.8 compare
motility outer cut, LB soft agar motility assay -0.6 -2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.5 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.5 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.6 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.5 -2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.6 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.5 -2.3 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.5 -1.4 compare
phage P. simiae OR Antrim MOI 1 -0.5 -1.5 compare
carbon source L-Citrulline (C) +0.5 +1.8 compare
liquid stress Scopoletin 3 mM; liquid stress +0.5 +1.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.5 compare
carbon source L-Valine (C) +0.6 +0.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.6 +1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +1.8 compare
stress 1-ethyl-3-methylimidazolium chloride 200 mM +0.6 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.2 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.4 +1.6 compare