Fitness data for PS417_24580 in Pseudomonas simiae WCS417

pseudouridine synthase
SEED: Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase E

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
soil soil sample 7; outgrowth in LB -1.6 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.3 -3.3 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.2 -2.1 compare
soil soil sample 3; outgrowth in LB -1.1 -2.2 compare
rhizosphere rhizosphere sample 8; outgrowth in LB -1.0 -2.4 compare
root root sample 6; outgrowth in LB -1.0 -1.6 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -2.2 compare
carbon source Carbon source D-Mannitol 5 mM -0.8 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.8 -2.0 compare
stress Nalidixic 0.025 mg/ml +0.8 +3.8 compare
stress Neomycin 0.04 mg/ml +0.8 +4.2 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 +2.3 compare
phage P. simiae Grant Run MOI 10 +0.9 +2.1 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 +2.1 compare
stress Gentamicin 0.008 mg/ml +1.1 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.2 +1.1 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +1.3 +2.8 compare