Fitness data for PS417_24390 in Pseudomonas simiae WCS417

peptidase
SEED: ABC exporter for hemopore HasA, outer membrane component HasF
KEGG: outer membrane protein HasF

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
rhizosphere rhizosphere sample 1; outgrowth in LB -0.7 -2.1 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.6 -4.1 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.5 -1.9 compare
motility inner cut, LB soft agar motility assay -0.5 -2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -1.9 compare
phage JP1 MOI 1 -0.4 -1.9 compare
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) -0.4 -2.2 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.4 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -1.6 compare
supernatant control Vogels_fungal_media 0.1X -0.4 -1.5 compare
motility outer cut, LB soft agar motility assay -0.4 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.3 compare
seeds Growth on radish seeds for 72 hours -0.3 -1.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.3 +1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 +2.0 compare
phage JP1 MOI 0.1 +0.4 +1.7 compare
phage JP1 MOI 10 +0.4 +2.0 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +0.5 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.7 compare