Fitness data for PS417_23670 in Pseudomonas simiae WCS417

Muconate cycloisomerase (EC 5.5.1.1) (from data)
Original annotation: muconate cycloisomerase
SEED: Muconate cycloisomerase (EC 5.5.1.1)
KEGG: muconate cycloisomerase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
carbon source L-Tryptophan (C) -2.8 -7.8 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -1.5 -2.2 compare
stress Gentamicin 0.008 mg/ml -1.3 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2 -3.5 compare
supernatant control Vogels_fungal_media 0.1X -1.1 -2.6 compare
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x -0.9 -3.2 compare
soil soil sample 3; outgrowth in LB -0.8 -1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -1.7 compare
carbon source Carbon source L-Ornithine 10 mM -0.8 -2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.8 -1.9 compare
phage P. simiae ORA MOI 10 -0.8 -2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.8 compare
carbon source Carbon source D-Mannitol 2.5 mM -0.7 -1.4 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.7 -2.6 compare
motility inner cut, LB soft agar motility assay -0.7 -2.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.7 -2.0 compare
seeds Growth on radish seeds for 72 hours +0.8 +1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.8 +3.1 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.8 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.3 +2.1 compare