Fitness data for PS417_23640 in Pseudomonas simiae WCS417

LysR family transcriptional regulator
SEED: Hydrogen peroxide-inducible genes activator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage P. simiae ORA MOI 0.1 -0.8 -2.3 compare
seeds Growth on radish seeds for 72 hours -0.7 -1.7 compare
phage P. simiae OR1 MOI 0.1 -0.7 -1.4 compare
carbon source L-Valine (C) -0.6 -2.3 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -1.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.5 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.5 -1.7 compare
stress Dimethyl Sulfoxide 5 vol% -0.5 -2.1 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.5 +3.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.5 compare
stress 1-ethyl-3-methylimidazolium acetate 35 mM +0.6 +2.9 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.6 +2.1 compare
phage Wcs_0.1 +0.6 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +1.1 compare
carbon source L-Valine (C) +0.9 +2.0 compare