Fitness data for PS417_01970 in Pseudomonas simiae WCS417

pilus assembly protein
SEED: Type IV pilus biogenesis protein PilO / Type IV pilus biogenesis protein PilP
KEGG: type IV pilus assembly protein PilO

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
agar plate interaction control Taped volatile agar plate with no fungus -1.0 -2.5 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.9 -3.0 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -2.3 compare
phage JP1 MOI 10 -0.9 -2.4 compare
soil soil sample 6; outgrowth in LB -0.9 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.8 -3.2 compare
phage P. simiae OR1 MOI 0.1 -0.8 -2.5 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.8 -2.7 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.8 compare
soil soil sample 4; outgrowth in LB -0.8 -2.6 compare
phage JP1 MOI 1 -0.7 -1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -1.4 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -2.1 compare
phage JP1 MOI 10 -0.6 -1.8 compare
liquid stress Scopoletin 3 mM; liquid stress -0.6 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 +1.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 +2.1 compare
stress Neomycin 0.04 mg/ml +0.7 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.0 +1.4 compare