Fitness data for PS417_19365 in Pseudomonas simiae WCS417

ABC transporter substrate-binding protein
SEED: Protein of unknown function DUF1446

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
soil soil sample 4; outgrowth in LB -0.5 -2.3 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -0.5 -1.9 compare
soil soil sample 5; outgrowth in LB -0.5 -1.5 compare
phage P. simiae OR Antrim MOI 0.1 -0.4 -2.0 compare
phage P. simiae Grant Run MOI 10 -0.4 -1.9 compare
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x -0.4 -2.2 compare
phage P. simiae OR Antrim MOI 10 -0.4 -1.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.4 -1.6 compare
phage P. simiae OR Antrim MOI 1 -0.4 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 +1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +2.2 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.4 +1.8 compare
solid stress 80% Methanol 0.5 mM; solid stress +0.4 +2.4 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 +0.6 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +0.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.9 compare