Fitness data for PS417_17670 in Pseudomonas simiae WCS417

ABC transporter permease
SEED: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
KEGG: branched-chain amino acid transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


Add gene:

Or see all 552 experiments or choose conditions

group condition fitness t score  
soil soil sample 5; outgrowth in LB -1.0 -1.5 compare
seeds Growth on radish seeds for 72 hours -1.0 -2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Phenylalanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.0 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 -1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -1.5 compare
soil soil sample 7; outgrowth in LB -0.9 -1.3 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.8 -1.8 compare
soil soil sample 8; outgrowth in LB -0.8 -1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.8 -2.1 compare
phage P. simiae OR1 MOI 0.1 -0.8 -1.4 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.7 +1.9 compare
solid stress 80% Methanol 3 mM; solid stress +0.7 +2.0 compare
stress 6-methoxy-2(3H)-benzoxazolone 2.5 mM +0.7 +1.8 compare
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.8 +2.7 compare
liquid stress 80% Methanol 3 mM; liquid stress +0.8 +3.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.9 +3.3 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.9 +2.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.0 +1.6 compare
carbon source L-Valine (C) +1.0 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.1 +1.9 compare