Fitness data for PS417_16075 in Pseudomonas simiae WCS417

diguanylate cyclase
SEED: FIG160596: Signaling protein with membrane-bound sensor domain and GGDEF domain

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
stress methylglyoxal 0.032 vol% -1.0 -2.8 compare
soil soil sample 8; outgrowth in LB -0.9 -2.7 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.8 -2.4 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -0.7 -2.0 compare
carbon source L-Valine (C) -0.6 -2.2 compare
phage moi 100 Time6-phageFRS -0.6 -2.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.2 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -1.3 compare
stress Phosphomycin 0.002 mg/ml -0.5 -2.6 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -2.0 compare
motility inner cut, LB soft agar motility assay -0.5 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.9 compare
seeds Growth on radish seeds for 72 hours +0.5 +0.9 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.5 +2.1 compare
supernatant control Vogels_fungal_media 0.1X +0.5 +0.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.6 +1.9 compare
carbon source L-Valine (C) +0.6 +1.7 compare
seeds Growth on radish seeds for 24 hours +0.6 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +1.1 compare