Fitness data for PS417_15570 in Pseudomonas simiae WCS417

excinuclease ABC subunit A
SEED: Excinuclease ABC subunit A paralog of unknown function
KEGG: excinuclease ABC subunit A

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. simiae ORA MOI 0.1 -0.4 -2.5 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +1.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 +1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.5 compare
soil soil sample 8; outgrowth in LB +0.4 +1.2 compare
soil soil sample 4; outgrowth in LB +0.4 +1.1 compare
soil soil sample 3; outgrowth in LB +0.4 +1.1 compare
soil soil sample 2; outgrowth in LB +0.4 +1.4 compare
carbon source D-Glucosamine Hydrochloride (C) +0.5 +1.8 compare
soil soil sample 6; outgrowth in LB +0.5 +1.6 compare
soil soil sample 7; outgrowth in LB +0.5 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +2.0 compare
soil soil sample 5; outgrowth in LB +0.6 +1.8 compare
rhizosphere rhizosphere sample 8; outgrowth in LB +0.7 +1.6 compare
root root sample 6; outgrowth in LB +0.7 +1.2 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +0.7 +1.7 compare
rhizosphere rhizosphere sample 1; outgrowth in LB +0.9 +2.2 compare