Fitness data for PS417_15365 in Pseudomonas simiae WCS417

diaminopimelate epimerase
SEED: Diaminopimelate epimerase (EC 5.1.1.7)
KEGG: diaminopimelate epimerase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
root root sample 6; outgrowth in LB -1.5 -1.6 compare
seeds Growth on radish seeds for 72 hours -1.4 -1.8 compare
seeds Growth on radish seeds for 24 hours -1.3 -2.3 compare
no phage control Time6-nophage -1.2 -2.1 compare
carbon source 2'-Deoxyinosine 5 mM (C) -1.0 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 -1.2 compare
phage P. simiae Grant Run MOI 10 -1.0 -1.4 compare
phage P. simiae ORA MOI 0.1 -0.9 -1.3 compare
soil soil sample 8; outgrowth in LB -0.8 -1.3 compare
carbon source Carbon source D-Mannitol 2.5 mM -0.7 -1.4 compare
soil soil sample 3; outgrowth in LB -0.7 -1.1 compare
stress Phosphomycin 0.003 mg/ml -0.7 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -0.8 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.6 +1.7 compare
stress Neomycin 0.04 mg/ml +0.6 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.7 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +2.4 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.8 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.9 +2.0 compare