Fitness data for PS417_15210 in Pseudomonas simiae WCS417

protein activator of alkane oxidation PraB
SEED: protein activator of alkane oxidation PraB

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
root root sample 6; outgrowth in LB -1.2 -1.6 compare
soil soil sample 8; outgrowth in LB -1.1 -1.7 compare
no phage control Time6-nophage -0.7 -1.7 compare
motility inner cut, LB soft agar motility assay -0.7 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -1.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.6 -1.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +1.7 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +1.6 compare
solid stress 80% Methanol 3 mM; solid stress +0.6 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.3 compare
phage P. simiae OR Antrim MOI 0.1 +0.6 +1.8 compare
solid stress Scopoletin 3 mM; solid stress +0.7 +2.9 compare
phage JP1 MOI 1 +0.7 +1.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.7 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.7 +2.4 compare
carbon source L-Valine (C) +0.8 +1.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.0 +3.1 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.3 +3.8 compare