Fitness data for PS417_14215 in Pseudomonas simiae WCS417

diguanylate cyclase
SEED: DinB family protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.9 -3.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.8 compare
soil soil sample 5; outgrowth in LB -0.5 -2.0 compare
phage P. simiae OR Antrim MOI 0.1 -0.5 -1.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.5 -1.8 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -0.5 -1.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 -1.8 compare
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.4 -1.5 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.3 -1.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.3 compare
phage JP1 MOI 0.1 +0.3 +1.2 compare
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.3 +1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 +1.6 compare
solid stress 80% Methanol 3 mM; solid stress +0.3 +2.4 compare
seeds Growth on radish seeds for 72 hours +0.4 +1.2 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.4 +2.2 compare
rhizosphere rhizosphere sample 1; outgrowth in LB +0.4 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.1 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +1.8 compare