Fitness data for PS417_14100 in Pseudomonas simiae WCS417

alpha-ketoglutarate-dependent dioxygenase
SEED: Alkylated DNA repair protein AlkB
KEGG: alkylated DNA repair protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -1.3 compare
phage P. simiae Grant Run MOI 10 -0.6 -2.3 compare
carbon source Carbon source L-Ornithine 10 mM -0.6 -2.0 compare
solid stress Scopoletin 0.5 mM; solid stress -0.5 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.1 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.5 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -1.8 compare
nitrogen source Putrescine (N) +0.5 +2.3 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.3 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.5 +1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.5 +1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +2.2 compare
carbon source octanoate (C) +0.6 +2.3 compare
seeds Growth on radish seeds for 24 hours +0.6 +1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +2.5 compare
stress Nalidixic 0.025 mg/ml +0.6 +2.4 compare
phage Wcs_0.1 +0.7 +1.9 compare
supernatant control Vogels_fungal_media 0.1X +0.7 +1.9 compare
carbon source L-Valine (C) +0.9 +2.3 compare