Fitness data for PS417_13975 in Pseudomonas simiae WCS417

CdaR family transcriptional regulator
SEED: Sugar diacid utilization regulator SdaR
KEGG: carbohydrate diacid regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source 2-Deoxy-D-Ribose (C) -5.5 -6.0 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -4.8 -5.5 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -3.7 -4.2 compare
carbon source 2-Deoxy-D-Ribose (C) -3.4 -4.2 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -3.4 -3.8 compare
carbon source 2-Deoxy-D-ribonic lithium salt (C) -2.7 -7.3 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -2.7 -4.0 compare
carbon source 2-Deoxy-D-Ribose (C) -2.7 -9.4 compare
carbon source 2-Deoxy-D-Ribose (C) -2.5 -6.9 compare
phage P. simiae OR1 MOI 0.1 -1.2 -2.5 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.3 compare
seeds Growth on radish seeds for 72 hours -0.8 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.7 -1.8 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.6 -1.5 compare
soil soil sample 7; outgrowth in LB -0.6 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 +0.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.3 +3.0 compare