Fitness data for PS417_01355 in Pseudomonas simiae WCS417

membrane protein
SEED: Outer membrane porin, OprD family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.9 compare
soil soil sample 3; outgrowth in LB -0.5 -2.2 compare
soil soil sample 5; outgrowth in LB -0.5 -1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -2.0 compare
soil soil sample 2; outgrowth in LB -0.4 -2.1 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.4 -2.3 compare
root root sample 6; outgrowth in LB -0.4 -2.0 compare
carbon source Carbon source L-Citrulline 5 mM -0.4 -2.4 compare
soil soil sample 7; outgrowth in LB -0.4 -1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.4 compare
solid stress Fraxetin 3 mM; solid stress +0.4 +1.9 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.4 +2.6 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.4 +2.7 compare
stress Phosphomycin 0.003 mg/ml +0.4 +2.3 compare
phage P. simiae Grant Run MOI 0.1 +0.5 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +2.3 compare
seeds Growth on radish seeds for 72 hours +0.6 +2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +4.6 +12.7 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +7.5 +28.4 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +7.6 +31.4 compare