Fitness data for PS417_13460 in Pseudomonas simiae WCS417

peptidase
SEED: ABC-type protease exporter, ATP-binding component PrtD/AprD
KEGG: ATP-binding cassette, subfamily C, bacterial HasD

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source 2'-Deoxyinosine 5 mM (C) -0.6 -2.4 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.6 -2.4 compare
carbon source Carbon source D-Mannitol 10 mM -0.6 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.5 -1.8 compare
solid stress 80% Methanol 0.5 mM; solid stress -0.5 -1.9 compare
solid stress Fraxetin 3 mM; solid stress -0.4 -2.1 compare
solid stress Scopoletin 0.5 mM; solid stress -0.4 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +1.6 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +1.8 compare
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.5 +1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.2 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x +0.5 +1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.5 +1.9 compare
stress Gentamicin 0.008 mg/ml +0.5 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.0 compare
seeds Growth on radish seeds for 72 hours +0.6 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +1.7 compare
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.7 +1.6 compare