Fitness data for PS417_13125 in Pseudomonas simiae WCS417

ATP-dependent DNA ligase
SEED: ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD
KEGG: DNA ligase (ATP)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
soil soil sample 3; outgrowth in LB -0.7 -1.0 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.7 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -2.1 compare
stress methylglyoxal 0.032 vol% -0.6 -1.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -2.0 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.6 -1.9 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.6 -1.6 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -0.5 -1.3 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.5 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -1.2 compare
phage P. simiae OR Antrim MOI 10 -0.5 -1.4 compare
stress R2A with Fusaric 120 ug/mL +0.5 +2.0 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.5 +2.0 compare
phage JP1 MOI 10 +0.5 +1.3 compare
phage P. simiae Grant Run MOI 0.1 +0.5 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +1.5 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 +3.2 compare