Fitness data for PS417_12815 in Pseudomonas simiae WCS417

diguanylate cyclase
SEED: Sensor histidine kinase/response regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
root root sample 6; outgrowth in LB -0.8 -3.1 compare
soil soil sample 5; outgrowth in LB -0.7 -1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -2.4 compare
phage P. simiae ORA MOI 0.1 -0.7 -2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.9 compare
motility outer cut, LB soft agar motility assay -0.6 -2.7 compare
liquid stress 80% Methanol 3 mM; liquid stress -0.6 -3.5 compare
seeds Growth on radish seeds for 72 hours -0.5 -2.2 compare
soil soil sample 3; outgrowth in LB -0.5 -1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.8 compare
stress Nalidixic 0.015 mg/ml -0.5 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -2.6 compare
nitrogen source Inosine (N) -0.4 -2.7 compare
solid stress Scopoletin 3 mM; solid stress -0.4 -2.2 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -1.9 compare
ecofab LB 0.5x in EcoFAB_3.5mL +0.4 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.7 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.5 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +1.1 compare