Fitness data for PS417_12610 in Pseudomonas simiae WCS417

RNA polymerase sigma factor
SEED: RNA polymerase sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
stress methylglyoxal 0.032 vol% -1.3 -4.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -1.3 compare
stress Gentamicin 0.008 mg/ml +0.9 +0.9 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.9 +1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 +1.0 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 +1.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 +1.2 compare
soil soil sample 6; outgrowth in LB +1.5 +1.0 compare
soil soil sample 5; outgrowth in LB +1.7 +0.9 compare
soil soil sample 8; outgrowth in LB +1.8 +1.0 compare
soil soil sample 4; outgrowth in LB +1.8 +1.0 compare
soil soil sample 3; outgrowth in LB +1.8 +1.4 compare
rhizosphere rhizosphere sample 8; outgrowth in LB +1.9 +0.9 compare
soil soil sample 7; outgrowth in LB +2.1 +1.1 compare
soil soil sample 2; outgrowth in LB +2.1 +1.2 compare
rhizosphere rhizosphere sample 1; outgrowth in LB +2.3 +1.1 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +2.4 +1.0 compare
root root sample 6; outgrowth in LB +2.4 +1.2 compare