Fitness data for PS417_11750 in Pseudomonas simiae WCS417

TonB-dependent receptor
SEED: Ferrichrome-iron receptor
KEGG: iron complex outermembrane recepter protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
stress methylglyoxal 0.032 vol% -0.5 -2.2 compare
phage P. simiae OR Antrim MOI 1 -0.4 -2.5 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.4 -2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -2.2 compare
motility inner cut, LB soft agar motility assay -0.3 -2.2 compare
carbon source L-Valine (C) -0.3 -1.7 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.3 -1.7 compare
phage P. simiae ORA MOI 0.1 -0.3 -1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 -1.7 compare
phage P. simiae OR Antrim MOI 0.1 -0.3 -1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 +1.6 compare
seeds Growth on radish seeds for 72 hours +0.3 +1.4 compare
root root sample 6; outgrowth in LB +0.3 +1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 +1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +1.9 compare
carbon source L-Valine (C) +0.4 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.7 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.9 compare