Fitness data for PS417_11365 in Pseudomonas simiae WCS417

membrane protein
SEED: Putative outer membrane TonB-dependent receptor associated with haemagglutinin family outer membrane protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. simiae Grant Run MOI 10 -0.6 -2.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -2.4 compare
rhizosphere rhizosphere sample 1; outgrowth in LB -0.6 -2.2 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.5 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -2.4 compare
phage P. simiae Grant Run MOI 0.1 -0.5 -2.5 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.5 -2.2 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.5 -1.9 compare
phage P. simiae Grant Run MOI 0.1 -0.5 -2.2 compare
phage P. simiae OR Antrim MOI 0.1 -0.5 -1.6 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.4 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -1.6 compare
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.4 +2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 +2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 +2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5 +1.5 compare
solid stress Fraxetin 2 mM; solid stress +0.5 +2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.5 +2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.1 +1.5 compare