Fitness data for PS417_10800 in Pseudomonas simiae WCS417

caspase-1, p20

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. simiae OR1 MOI 0.1 -0.7 -2.0 compare
nophagecontrol Only library -0.6 -2.5 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.5 -1.6 compare
motility inner cut, LB soft agar motility assay -0.5 -1.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -1.5 compare
stress methylglyoxal 0.032 vol% -0.5 -0.7 compare
soil soil sample 8; outgrowth in LB -0.5 -1.2 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.4 -1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 +0.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.5 +3.0 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.6 +1.6 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +3.4 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.7 +1.5 compare
stress Gentamicin 0.008 mg/ml +0.8 +3.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.1 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.4 +1.5 compare