Fitness data for PS417_10530 in Pseudomonas simiae WCS417

LysR family transcriptional regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -1.8 -5.1 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -1.5 -5.6 compare
carbon source 2-Deoxy-D-ribonic lithium salt (C) -1.2 -3.2 compare
solid stress Fraxetin 2 mM; solid stress -0.7 -2.9 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.7 -2.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.8 compare
liquid stress Fraxetin 1 mM; liquid stress -0.6 -3.3 compare
solid stress 80% Methanol 2 mM; solid stress -0.6 -2.3 compare
supernatant control Vogels_fungal_media 0.1X -0.6 -1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.5 -1.3 compare
motility outer cut, LB soft agar motility assay -0.5 -1.9 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.5 -1.9 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.5 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +2.5 compare
phage P. simiae Grant Run MOI 10 +0.6 +1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 +1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +1.6 compare