Fitness data for PS417_09485 in Pseudomonas simiae WCS417

LysR family transcriptional regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.3 compare
phage JP1 MOI 1 -0.5 -1.8 compare
agar plate interaction control Taped volatile agar plate with no fungus -0.4 -2.2 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -0.4 -1.7 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.4 -1.8 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.4 -1.9 compare
rhizosphere rhizosphere sample 8; outgrowth in LB -0.3 -1.5 compare
stress Cisplatin 0.01 mg/ml -0.3 -1.8 compare
phage P. simiae Grant Run MOI 10 -0.3 -1.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.4 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.3 -2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.0 compare
stress Nalidixic 0.015 mg/ml +0.4 +2.7 compare
soil soil sample 2; outgrowth in LB +0.4 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +0.9 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +1.6 compare
stress Gentamicin 0.008 mg/ml +0.5 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.4 compare