Fitness data for PS417_00825 in Pseudomonas simiae WCS417

recombinase RecF

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.0)


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group condition fitness t score  
rhizosphere rhizosphere sample 2; outgrowth in LB -2.5 -2.4 compare
motility inner cut, LB soft agar motility assay -1.3 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.2 -2.1 compare
phage JP1 MOI 1 -1.2 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 -3.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.1 -1.5 compare
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -1.1 -2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -1.8 compare
motility inner cut, LB soft agar motility assay +1.0 +1.4 compare
phage P. simiae ORA MOI 1 +1.0 +1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.0 +2.3 compare
phage P. simiae OR Antrim MOI 1 +1.0 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.1 +1.5 compare
soil soil sample 5; outgrowth in LB +1.2 +2.1 compare
phage P. simiae OR Antrim MOI 0.1 +1.2 +1.3 compare
stress methylglyoxal 0.032 vol% +1.3 +1.9 compare
soil soil sample 8; outgrowth in LB +1.4 +3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +2.2 +1.9 compare