Fitness data for PS417_08300 in Pseudomonas simiae WCS417

histidine kinase
SEED: Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)
KEGG: two-component system, OmpR family, sensor histidine kinase KdpD

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 -3.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -2.7 compare
soil soil sample 2; outgrowth in LB -0.5 -1.8 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -2.7 compare
stress methylglyoxal 0.032 vol% -0.5 -2.0 compare
soil soil sample 6; outgrowth in LB -0.4 -1.4 compare
phage P. simiae OR Antrim MOI 1 -0.4 -2.4 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 -2.4 compare
ecofab LB 0.5x in EcoFAB_3.5mL -0.4 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +1.6 compare
rhizosphere rhizosphere sample 1; outgrowth in LB +0.4 +1.0 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 +1.6 compare
carbon source L-Valine (C) +0.4 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.8 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x +0.5 +2.7 compare