Fitness data for PS417_08230 in Pseudomonas simiae WCS417

lipopolysaccharide biosynthesis protein RfbH
SEED: CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase (EC 4.2.1.-)
KEGG: CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 3.3)


Add gene:

Or see all 552 experiments or choose conditions

group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -5.6 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -5.6 -2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -5.5 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -5.4 -2.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -5.4 -2.1 compare
soil soil sample 3; outgrowth in LB -4.9 -2.5 compare
carbon source Gly-Glu (C) -4.2 -3.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.2 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.2 -2.2 compare
stress Polymyxin B sulfate 0.006 mg/ml -4.0 -3.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.0 -1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.6 -1.9 compare
agar plate interaction control Taped volatile agar plate with no fungus -3.6 -2.1 compare
rhizosphere rhizosphere sample 2; outgrowth in LB -3.5 -1.9 compare
supernatant control Vogels_fungal_media 0.1X -3.5 -1.9 compare
carbon source succinate (C) -3.4 -3.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.3 -1.6 compare
stress Neomycin 0.04 mg/ml +4.3 +18.6 compare
stress Gentamicin 0.008 mg/ml +4.4 +8.0 compare
stress Doxycycline hyclate 0.001 mg/ml +6.7 +15.2 compare