Fitness data for PS417_07010 in Pseudomonas simiae WCS417

pseudouridine synthase
SEED: Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)
KEGG: ribosomal small subunit pseudouridine synthase A

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
soil soil sample 3; outgrowth in LB -1.6 -2.1 compare
agar plate interaction control Taped volatile agar plate with no fungus -1.3 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -1.4 compare
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -1.1 -2.1 compare
carbon source L-Asparagine (C) -1.1 -3.1 compare
carbon source 2'-Deoxyinosine 5 mM (C) -1.1 -1.5 compare
carbon source L-Citrulline (C) -1.1 -2.6 compare
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.9 -1.9 compare
carbon source L-Leucine (C) -0.9 -2.3 compare
carbon source 2'-Deoxyinosine 5 mM (C) -0.9 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.8 -1.7 compare
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.8 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.8 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -1.3 compare
carbon source L-Glutamine (C) -0.8 -2.8 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +1.5 compare
phage P. simiae OR Antrim MOI 10 +0.9 +1.5 compare
root root sample 6; outgrowth in LB +0.9 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 +1.5 compare