Fitness data for PS417_06730 in Pseudomonas simiae WCS417

3-carboxy-cis,cis-muconate cycloisomerase
SEED: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2)
KEGG: 3-carboxy-cis,cis-muconate cycloisomerase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.3)


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group condition fitness t score  
rhizosphere rhizosphere sample 8; outgrowth in LB -3.1 -1.5 compare
stress Phosphomycin 0.001 mg/ml -1.8 -1.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.7 -1.0 compare
motility inner cut, LB soft agar motility assay -1.5 -1.8 compare
solid stress Scopoletin 2 mM; solid stress -1.5 -1.8 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.5 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.5 -1.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.4 -1.5 compare
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) -1.4 -1.5 compare
stress Phosphomycin 0.002 mg/ml -1.4 -1.6 compare
soil soil sample 2; outgrowth in LB -1.3 -1.0 compare
phage P. simiae Grant Run MOI 10 -1.3 -1.2 compare
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -1.3 -1.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.3 -0.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Methionine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.3 -1.0 compare
carbon source 2-Deoxy-D-Ribose (C) +1.4 +2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +1.4 +2.8 compare
agar plate interaction control Taped volatile agar plate with no fungus +1.6 +1.2 compare
phage P. simiae Grant Run MOI 0.1 +1.7 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +1.9 +3.1 compare