Fitness data for PS417_06345 in Pseudomonas simiae WCS417

pseudouridine synthase
SEED: tRNA pseudouridine 13 synthase (EC 4.2.1.-)
KEGG: tRNA pseudouridine synthase D

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.8 -2.4 compare
exudates RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x -0.6 -2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -3.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 -2.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.7 compare
carbon source L-Leucine (C) -0.5 -1.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.3 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -2.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.5 compare
stress Chloramphenicol 0.015 mg/ml -0.5 -2.0 compare
soil soil sample 6; outgrowth in LB +0.5 +1.6 compare
agar plate interaction control Taped volatile agar plate with no fungus +0.6 +2.0 compare
phage Wcs_0.1 +0.6 +1.7 compare
phage P. simiae ORA MOI 0.1 +0.6 +2.0 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 +1.8 compare
phage P. simiae OR Antrim MOI 0.1 +0.7 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +2.7 compare