Fitness data for PS417_05870 in Pseudomonas simiae WCS417

RNA-binding protein S4
SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase F

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.7 -1.7 compare
phage P. simiae Grant Run MOI 0.1 -0.5 -1.6 compare
ecofab LB in EcoFAB_3.5mL -0.5 -2.1 compare
phage P. simiae OR Antrim MOI 0.1 -0.5 -1.4 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -2.5 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.9 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -1.7 compare
stress L-Lysine 60 mM +0.4 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +1.6 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 +2.0 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 +1.8 compare
stress LB_noSalt with Chloride 1100 mM +0.5 +1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.8 compare
stress LB_noSalt with Chloride 1100 mM +0.5 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.5 compare
root root sample 6; outgrowth in LB +0.6 +2.1 compare
rhizosphere rhizosphere sample 2; outgrowth in LB +0.6 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +1.1 compare
phage P. simiae OR1 MOI 0.1 +0.7 +1.6 compare