Fitness data for PS417_05585 in Pseudomonas simiae WCS417

hypothetical protein
SEED: Cys-tRNA(Pro) deacylase YbaK

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source 2'-Deoxyinosine 5 mM (C) -1.0 -2.1 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -2.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -1.2 compare
phage P. simiae OR Antrim MOI 10 -0.7 -1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -1.0 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -1.1 compare
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.7 -1.7 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -1.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -0.8 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -1.2 compare
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 -1.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.6 +2.7 compare
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 +2.6 compare
carbon source L-Valine (C) +0.7 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +1.2 compare
carbon source L-Valine (C) +0.7 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +2.2 compare