Fitness data for Atu5490 in Agrobacterium fabrum C58

ECF family RNA polymerase sigma factor
SEED: ECF family sigma factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage AgroPhage_E04 -0.5 -2.4 compare
nitrogen source nitrate (N) -0.5 -2.2 compare
nitrogen source DL-2-Aminobutyric (N) -0.5 -2.0 compare
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.4 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.7 compare
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -2.1 compare
pH R2A pH 5.5 -0.4 -2.5 compare
nitrogen source L-Glutamic (N) -0.4 -1.7 compare
pH R2A pH 5.5 -0.3 -2.3 compare
stress R2A with Tetracycline 0.002 mM -0.3 -1.9 compare
carbon source D-Trehalose (C) -0.3 -2.2 compare
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +1.8 compare
carbon source Methyl alpha-D-glucopyranoside (C) +0.4 +1.7 compare
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +1.0 compare
stress R2A with nitrate 375 mM +0.4 +2.0 compare
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days +0.4 +1.9 compare
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +1.3 compare
carbon source D-Saccharic potassium salt (C) +0.5 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +2.0 compare