Fitness data for Atu5055 in Agrobacterium fabrum C58

ATP-dependent DNA ligase
SEED: ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD
KEGG: DNA ligase (ATP)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
carbon source D-Sorbitol (C) -0.3 -2.2 compare
nitrogen source NAG (N) -0.3 -1.9 compare
phage AgroPhage_C10 -0.2 -1.7 compare
stress R2A with Hydrogen peroxide 0.1 mM -0.2 -1.8 compare
nitrogen source L-Aspartic Acid (N) -0.2 -1.7 compare
carbon source Dextrin from potato starch (C) -0.2 -1.5 compare
stress R2A with Chromium(III) Chloride Hexahydrate 0.02 mM -0.2 -1.7 compare
stress R2A with Phenazine methosulfate 0.05 mM -0.2 -1.7 compare
stress R2A with Tetracycline 0.002 mM -0.2 -1.6 compare
carbon source Methyl beta-D-glucopyranoside (C) -0.2 -1.8 compare
stress R2A with Nalidixic 0.02 mM -0.2 -1.7 compare
stress R2A with Polymyxin B sulfate 0.00075 mM -0.2 -1.6 compare
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +1.2 compare
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +1.3 compare
carbon source D-Sorbitol (C) +0.2 +1.4 compare
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.2 +1.5 compare
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +1.7 compare
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.3 +2.0 compare
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.3 +1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +2.2 compare