Fitness data for b3909 in Escherichia coli BW25113

kdgT: 2-keto-3-deoxy-D-gluconate transport system (VIMSS)
SEED: 2-keto-3-deoxygluconate permease (KDG permease)
KEGG: 2-keto-3-deoxygluconate permease

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source carbon source D-Glucose 0.25mM -1.2 -2.0 compare
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM -1.0 -2.7 compare
nophagecontrol R1_N4_T1_phage0 -0.8 -2.2 compare
attachment_assay_attached_sample Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB -0.7 -1.9 compare
stress hexanol 0.31 vol% -0.6 -2.7 compare
phage T7_phage 0.00015625 MOI TC4 -0.6 -1.4 compare
attachment_assay_attached_sample Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB -0.5 -1.6 compare
stress Cisplatin 0.05 mg/ml -0.5 -2.6 compare
stress Chlorite 1.25 mM -0.5 -1.7 compare
stress 1-ethyl-3-methylimidazolium chloride 40 mM -0.4 -1.9 compare
carbon source D-Glucose (C) MOPS -0.4 -2.4 compare
stress syringaldehyde 10 mM -0.4 -2.0 compare
carbon source carbon source D-Mannose 1mM -0.4 -1.7 compare
carbon source Inosine 0.3728 mM (C) +0.5 +2.9 compare
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr +0.5 +2.6 compare
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr +0.5 +1.3 compare
stress LB Anaerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM +0.5 +2.5 compare
stress LB Anaerobic with Hygromycin B 0.00025 mM +0.5 +3.0 compare
carbon source Dodecanol and Rhamnolipid (C) +0.6 +2.1 compare
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.6 +2.2 compare