Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5710
pH	Growth at pH8 and (C) D-Glucose	-0.8
carbon source	carbon source D-Glucose 55.5 mM	-0.7
carbon source	Tween 20 (C)	-0.6
phage	P. put South MOI 1	-0.6
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.5
pH	Growth at pH9 and (C) Trisodium citrate	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5
temperature	Growth at 30C; with MOPS	-0.5
pH	Growth at pH7 and (C) Trisodium citrate	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4
pH	Growth at pH8 and (C) D-Glucose	-0.4
nitrogen source	nitrite (N)	-0.4
nitrogen source	nitrate (N)	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4
no stress control	Growth with no stress	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	-0.4
nitrogen source	nitrogen source nitrite 1mM	+0.4
nitrogen source	Propandiamine (N)	+0.4
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.4
nitrogen source	2,6-diaminopimelic (N)	+0.4
carbon source	DL-2-Aminoadipic 10 mM (C)	+0.4
temperature shift	Temperature shift 10_to_25; with MOPS	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.5
phage	PUT 8 MOI 1	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.6
nitrogen source	D-2-Aminobutyric (N)	+0.6
		remove PP_5710