Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5703
nitrogen source	2,6-diaminopimelic (N)	-1.0
nitrogen source	2,6-diaminopimelic (N)	-0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6
carbon source	Glutaric (C)	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
nitrogen source	TNT (N)	-0.4
pH	Growth at pH6 and (C) D-Glucose	-0.4
nitrogen source	Ammonium chloride (N)	-0.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4
nitrogen source	Ammonium chloride and TNT (N)	-0.4
pH	Growth at pH7 and (C) D-Glucose	-0.4
temperature shift	Temperature shift 30_to_25	-0.4
carbon source	D-Glucose (C); with MOPS	+0.4
phage	PUT 8 MOI 1	+0.4
r2a control	R2A control	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.4
carbon source	2,3-Butanediol (C)	+0.4
carbon source	ferulate (C); with MOPS	+0.4
carbon source	Delta-Nonalactone (C)	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.4
stress	Growth with Chloride 500 mM; with MOPS	+0.5
carbon source	D-Glucose (C)	+0.5
carbon source	carbon source D-Glucose 55.5 mM	+0.5
nitrogen source	nitrogen source nitrite 1mM	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
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