Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_5528
stress R2A with Polymyxin B sulfate 0.002 mg/ml -4.1
micoeukaryotes Tetrahymena sp., Mixed culture-2 -3.3
nitrogen source D-2-Aminobutyric (N) -3.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -2.8
phage P. putida Sci Big MOI 0.1 -2.8
carbon source 4-Methyl-2-oxopentanoic (C) -2.8
phage P. putida PUT 7 MOI 1 -2.7
nitrogen source 2,6-diaminopimelic (N) -2.6
carbon source D-Glucose (C) -2.6
r2a control with 0.2x vogels R2A control with 0.2X Vogels -2.6
carbon source Myristic (C) -2.3
nitrogen source 2,6-diaminopimelic (N) -2.3
carbon source carbon source 2-Deoxy-D-glucose 100 mM -2.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.0
nitrogen source Putrescine (N) -2.0
carbon source 3-Methyl-2-Oxobutanoic Acid (C) -1.9
temperature Growth at 25C -1.9
carbon source D-Glucose (C); with MOPS -1.8
nitrogen source nitrogen source nitrite 1mM -1.8
temperature shift Temperature shift 30_to_21; with MOPS -1.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.8
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +2.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +2.3
carbon source Valerolactone (C) +3.1
carbon source Valerolactone (C) +3.6
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PP_5528