Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5384
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.4
pH	pH 9	-0.3
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.3
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.3
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-0.3
pH	Growth at pH6 and (C) D-Glucose	-0.3
carbon source	D-Lysine 10 mM (C)	-0.3
pH	Growth at pH8 and (C) Trisodium citrate	-0.3
pH	Growth at pH7 and (C) Trisodium citrate	-0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	-0.3
carbon source	carbon source Bisabolol 45 mM	-0.3
carbon source	butyrate (C)	-0.3
temperature	Growth at 34C	-0.2
carbon source	ferulate (C); with MOPS	-0.2
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.2
carbon source	Octanoic (C)	-0.2
carbon source	L-Leucine (C)	-0.2
carbon source	Lignin Monomers (C)	-0.2
carbon source	Delta-Nonalactone (C)	-0.2
carbon source	Octanoic (C)	-0.2
mixed community	Putida_ML5X with Paraburkholderia sabiae T6SS mutant	+0.2
toxin	pUC18_phdP1_pSU18T_docP1	+0.2
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2
nitrogen source	NAG (N); with MOPS	+0.2
micoeukaryotes	Dictyostellum sp.mixed culture-2	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.3
phage	P. putida Missley MOI 0.1	+0.4
phage	P. putida PUT 7 MOI 1	+0.4
		remove PP_5384