Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_5373
carbon source	D-Glucose (C)	-0.4
nitrogen source	Urea (N); with MOPS	-0.4
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.3
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.3
carbon source	Tween 20 (C)	-0.3
carbon source	ferulate (C); with MOPS	-0.3
carbon source	5-Aminovaleric 10 mM (C)	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.3
nitrogen source	nitrogen source nitrate 5mM	-0.3
stress	Growth with Chloride 500 mM; with MOPS	-0.3
carbon source	4-Aminobutyric 10 mM (C)	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3
no stress control	Growth with no stress	-0.3
carbon source	Tween 20 (C)	-0.3
carbon source	1,3-Butandiol (C)	-0.2
carbon source	L-Glutamic (C)	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2
carbon source	Trisodium citrate 10 mM (C)	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
phage	P. putida Missley MOI 0.1	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3
phage	P. putida Sci small MOI 0.1	+0.4
phage	P. putida PUT 7 MOI 1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
nitrogen source	D-2-Aminobutyric (N)	+0.4
nitrogen source	Propandiamine (N)	+0.5
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