Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_5353
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.6
carbon source Delta-Nonalactone (C) -1.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -1.0
nitrogen source Propandiamine (N) -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.9
nitrogen source spermidine (N) -0.9
temperature Growth at 30C; with MOPS -0.9
nitrogen source spermidine (N) -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.8
carbon source Delta-Undecalactone (C) -0.8
toxin pUC18_phdP1_pSU18T_docP1 -0.8
stress 2-Ethylhexanol 0.4 vol% -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8
pH D-Glucose (C) pH 6 -0.8
carbon source 2,3-Butanediol (C) -0.7
carbon source carbon source 4-vinylphenol 0.1 mM +0.7
carbon source ferulate (C); with MOPS +0.7
temperature Growth at 30C; with MOPS +0.7
nitrogen source 2,6-diaminopimelic (N) +0.8
nitrogen source Urea (N) +0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8
pH pH 7 +0.8
phage P. putida PUT10 MOI 10 +0.8
pH Valerolactone (C) pH 6.5 +0.8
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.9
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PP_5353