Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_5288
phage PUT8 MOI 0.1 -0.8
phage PUT8 MOI 0.1 -0.7
carbon source Valerolactone (C) -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.7
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -0.6
phage P. put PUT 10 MOI 10 -0.6
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5
phage P. put PUT 10 MOI 10 -0.5
temperature Growth at 30C; with MOPS -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.5
carbon source 4-Methyl-2-oxopentanoic (C) +0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5
nitrogen source D-2-Aminobutyric (N) +0.5
carbon source ferulate (C); with MOPS +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5
pH Growth at pH9 and (C) Trisodium citrate +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5
pH pH 8 +0.5
pH pH 9 +0.5
carbon source carbon source Bisabolene 48.9 mM +0.5
pH Growth at pH7 and (C) Trisodium citrate +0.5
phage P. putida Sci small MOI 0.1 +0.5
carbon source Tween 20 (C) +0.6
pH Growth at pH8 and (C) D-Glucose +0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.6
carbon source ferulate (C); with MOPS +0.7
carbon source Butyl stearate (C) +0.8
pH pH 5 +0.8
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PP_5288