Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5267
carbon source	acetate (C)	-5.8
carbon source	Myristic (C)	-5.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-5.1
phage	P. putida Sci small MOI 0.1	-4.7
temperature	Growth at 25C	-4.2
phage	P. putida Sci Big MOI 0.1	-3.7
carbon source	ferulate (C); with MOPS	-3.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-3.3
micoeukaryotes	C.elegans, mixed culture-2	-3.2
carbon source	2-Methylbutanoic (C)	-3.1
reactor_pregrowth	Adaptation in M9 media timecourse 1; day 3	-3.1
nitrogen source	D-2-Aminobutyric (N)	-2.9
nitrogen source	2,6-diaminopimelic (N)	-2.9
nitrogen source	NAG (N); with MOPS	-2.7
temperature shift	Temperature shift 30_to_21; with MOPS	-2.6
temperature	Growth at 30C; with MOPS	-2.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-2.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-2.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-2.4
nitrogen source	nitrogen source nitrate 5mM	-2.4
carbon source	ferulate (C); with MOPS	-2.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-2.2
temperature shift	Temperature shift 10_to_25; with MOPS	-2.2
phage	P. put South MOI 10	-2.1
pH	Growth at pH9 and (C) Trisodium citrate	-2.0
pH	Growth at pH7 and (C) Trisodium citrate	-2.0
pH	Growth at pH6 and (C) D-Glucose	-2.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-1.9
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