Fitness for 1 genes in Pseudomonas putida KT2440

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Top 30 experiments (either direction), sorted by average fitness

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Group Condition PP_5257
carbon source L-Lysine (C) -7.4
carbon source L-Lysine (C) -6.0
carbon source D-Lysine 10 mM (C) -4.7
carbon source L-Lysine (C) -4.6
carbon source L-Lysine 10 mM (C) -4.0
carbon source D-Lysine 10 mM (C) -3.1
nitrogen source D-Lysine (N) -2.8
nitrogen source D-Lysine (N) -2.6
nitrogen source L-Pipecolic Acid (N) -2.6
nitrogen source L-Pipecolic Acid (N) -2.4
micoeukaryotes C.elegans, mixed culture-1 -1.7
micoeukaryotes Acanthamoeba sp., muxed culture-2 -1.3
micoeukaryotes C.elegans, mixed culture-2 -1.2
micoeukaryotes Dictyostellum sp.mixed culture-2 -1.1
carbon source Cholinium lysinate (C) -1.0
nitrogen source L-Lysine (N) -1.0
micoeukaryotes Dictyostellum sp.mixed culture-1 -1.0
nitrogen source L-Lysine (N) -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7
phage P. putida Sci small MOI 0.1 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.5
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.5
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5
carbon source carbon source 3-O-methyl-glucose 50 mM +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6
nitrogen source Propandiamine (N) +0.8
nitrogen source Propandiamine (N) +1.0
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PP_5257