Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5211
nitrogen source	DL-2-Aminobutyric (N)	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1
pH	Growth at pH9 and (C) Trisodium citrate	-1.0
phage	P. putida Sci small MOI 0.1	-0.9
pH	Growth at pH6 and (C) D-Glucose	-0.8
micoeukaryotes	Dictyostellum sp.mixed culture-2	-0.8
no stress control	Growth with no stress	-0.8
temperature	Growth at 25C	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.7
carbon source	Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB	-0.7
temperature shift	Temperature shift 10_to_30; with MOPS	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6
carbon source	L-tyrosine 5 mM (C)	-0.6
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.6
pH	pH 6	+0.6
nitrogen source	Urea (N)	+0.6
temperature	Growth at 25C	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	+0.7
pH	Valerolactone (C) pH 6.5	+0.7
stress	Growth with Chloride 500 mM; with MOPS	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.7
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.8
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+0.9
nitrogen source	NAG (N); with MOPS	+1.0
pH	pH 8	+1.3
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